---
title: "Machine Learning Directed Study Report 2"
description: |
  Advanced processing of 3D meshes using Julia, and data science in Matlab.
author:
  - name: Anson Biggs
    url: https://ansonbiggs.com
repository_url: https://gitlab.com/orbital-debris-research/directed-study/report-2
date: 2022-04-03
output:
  distill::distill_article:
    self_contained: false
categories:
  - Matlab
  - Orbital Debris
  - Julia
preview: Figures/final_scatter.png
bibliography: citations.bib
draft: false
---

## Gathering Data

To get started on the project before any scans of the actual debris are made available, I opted to
find 3D models online and process them as if they were data collected by my team. GrabCAD is an
excellent source of high-quality 3D models, and all the models have, at worst, a non-commercial
license making them suitable for this study. The current dataset uses three separate satellite
assemblies found on GrabCAD, below is an example of one of the satellites that was used.

![Example CubeSat Used for Analysis, @interfluo6UCubeSatModel](Figures/assembly.jpg)

## Data Preparation

The models were processed in Blender, which quickly converted the assemblies to `stl` files, giving
108 unique parts to be processed. Since the expected final size of the dataset is expected to be in
the magnitude of the thousands, an algorithm capable of getting the required properties of each part
is the only feasible solution. From the analysis performed in
[Report 1](https://gitlab.com/orbital-debris-research/directed-study/report-1/-/blob/main/README.md),
we know that the essential debris property is the moments of inertia which helped narrow down
potential algorithms. Unfortunately, this is one of the more complicated things to calculate from a
mesh, but thanks to a paper from [@eberlyPolyhedralMassProperties2002] titled
[Polyhedral Mass Properties](https://www.geometrictools.com/Documentation/PolyhedralMassProperties.pdf),
his algorithm was implemented in the Julia programming language. The current implementation of the
algorithm calculates a moment of inertia tensor, volume, center of gravity, characteristic length,
and surface body dimensions in a few milliseconds per part. The library can be found
[here.](https://gitlab.com/MisterBiggs/stl-process) The characteristic length is a value that is
heavily used by the NASA DebriSat project [@DebriSat2019] that is doing very similar work to this
project. The characteristic length takes the maximum orthogonal dimension of a body, sums the
dimensions then divides by 3 to produce a single scalar value that can be used to get an idea of
thesize of a 3D object.

![Current mesh processing pipeline](Figures/current_process.svg)

The algorithm's speed is critical not only for the eventual large number of debris pieces that have
to be processed, but many of the data science algorithms we plan on performing on the compiled data
need the data to be normalized. For the current dataset and properties, it makes the most sense to
normalize the dataset based on volume. Volume was chosen for multiple reasons, namely because it was
easy to implement an efficient algorithm to calculate volume, and currently, volume produces the
least amount of variation out of the current set of properties calculated. Unfortunately, scaling a
model to a specific volume is an iterative process, but can be done very efficiently using
derivative-free numerical root-finding algorithms. The current implementation can scale and process
all the properties using only 30% more time than getting the properties without first scaling.

```txt
 Row │ variable               mean      min        median     max
─────┼───────────────────────────────────────────────────────────────────
   1 │ surface_area           25.2002   5.60865     13.3338     159.406
   2 │ characteristic_length  79.5481   0.158521    1.55816     1582.23
   3 │ sbx                     1.40222  0.0417367   0.967078    10.0663
   4 │ sby                     3.3367   0.0125824   2.68461     9.68361
   5 │ sbz                     3.91184  0.29006     1.8185      14.7434
   6 │ Ix                      1.58725  0.0311782   0.23401     11.1335
   7 │ Iy                      3.74345  0.178598    1.01592     24.6735
   8 │ Iz                      5.20207  0.178686    1.742       32.0083
```

Above is a summary of the current 108 part with scaling. Since all the volumes are the same it is
left out of the dataset, the center of gravity is also left out of the dataset since it currently is
just an artifact of the `stl` file format. There are many ways to determine the 'center' of a 3D
mesh, but since only one is being implemented at the moment comparisons to other properties doesn't
make sense. The other notable part of the data is the model is rotated so that the magnitudes of
`Iz`, `Iy`, and `Ix` are in descending order. This makes sure that the rotation of a model doesn't
matter for characterization. The dataset is available for download here:

- [scaled_dataset.csv](https://gitlab.com/orbital-debris-research/directed-study/report-3/-/blob/main/scaled_dataset.csv)

## Characterization

The first step toward characterization is to perform a principal component analysis to determine
what properties of the data capture the most variation. `PCA` also requires that the data is scaled,
so as discussed above the dataset that is scaled by `volume` will be used. `PCA` is implemented
manually instead of the Matlab built-in function as shown below:

```matlab
% covaraince matrix of data points
S=cov(scaled_data);

% eigenvalues of S
eig_vals = eig(S);

% sorting eigenvalues from largest to smallest 
[lambda, sort_index] = sort(eig_vals,'descend');


lambda_ratio = cumsum(lambda) ./ sum(lambda)
```

Then plotting `lambda_ratio`, which is the `cumsum`/`sum` produces the following plot:

![PCA Plot](Figures/pca.png)

The current dataset can be described incredibly well just by looking at `Iz`, which again the models
are rotated so that `Iz` is the largest moment of inertia. Then including `Iy` and `Iz` means that a
3D plot of the principle moments of inertia almost capture all the variation in the data.

The next step for characterization is to get only the inertia's from the dataset. Since the current
dataset is so small, the scaled dataset will be used for rest of the characterization process. Once
more parts are added to the database it will make sense to start looking at the raw dataset. Now we
can proceed to cluster the data using the k-means method of clustering. To properly use k-means a
value of k, which is the number of clusters, needs to be determined. This can be done by creating an
elbow plot using the following code:

```matlab
for ii=1:20
    [idx,~,sumd] = kmeans(inertia,ii);
    J(ii)=norm(sumd);
end
```

Which produces the following plot:

![Elbow method to determine the required number of clusters.](Figures/kmeans.png)

As can be seen in the above elbow plot, at 6 clusters there is an "elbow" which is where there is a
large drop in the sum distance to the centroid of each cluster which means that it is the optimal
number of clusters. The inertia's can then be plotted using 6 k-means clusters produces the
following plot:

![Moments of Inertia plotted with 6 clusters.](Figures/inertia3d.png)

From this plot it is immediately clear that there are clusters of outliers. These are due to the
different shapes and the extreme values are slender rods or flat plates while the clusters closer to
the center more closely resemble a sphere. As the dataset grows it should become more apparent what
kind of clusters actually make up a satellite, and eventually space debris in general.

## Next Steps

The current dataset needs to be grown in both the amount of data and the variety of data. The most
glaring issue with the current dataset is the lack of any debris since the parts are straight from
satellite assemblies. Getting accurate properties from the current scans we have is an entire
research project in itself, so hopefully, getting pieces that are easier to scan can help bring the
project back on track. The other and harder-to-fix issue is finding/deriving more data properties.
Properties such as cross-sectional or aerodynamic drag would be very insightful but are likely to be
difficult to implement in code and significantly more resource intensive than the current properties
the code can derive.
